CRISPR

• Recording Mobile DNA in the Gut Microbiota Using an Escherichia Coli CRISPR-Cas Spacer Acquisition Platform(2020)Munck C, Sheth RU, Freedberg DE, Wang HE  . Nature Communications 11, no. 1, 7
• Programmable and portable CRISPR-Cas transcriptional activation in bacteria(2020)Ho HI, Fang J, Cheung J, and Wang H. bioRxiv
•  Multiplex recording of cellular events over time on CRISPR biological tape(2017)Sheth RU, Yim SS, Wu FL, and Wang HH .Science 258: Issue 6369, pp 1457-1461. DOI: 10.1126/science.aao0958.
•  Engineering and optimising deaminase fusions for genome editing (2016)Yang L, Briggs AW, Chew WL, Mali P, Guell M, Aach J, Goodman DB, Cox D, Kan Y, Lesha E, Soundararajan V, Zhang F, Church G. Nature Communications 7:13330.
• Generation of a gene-corrected isogenic control hiPSC line derived from a familial Alzheimer’s disease patient carrying a L150P mutation in presenilin 1(2016)Poon A, Schmid B, Pires C, Nielsen TT, Hjermind LE, Nielsen JE, Holst B, Hyttel P, and Fredue KK  . Stem Cell Research 17:466-469.
• Generation of a human induced pluripotent stem cell line via CRISPR-Cas9 mediated integration of a site-specific heterozygous mutation in CHMP2B(2106)Zhang Y, Schmid B, Nielse TT, Neilse JE, Clausen C, Hyttel P, Holst B, Freude KK  . Stem Cell Research 17: 148-150.
• A distant trophoblast-specific enhancer controls HLA-G expression at the maternal–fetal interface(2016)Ferreira LMR, Meissner TB, Mikkelse TS, Mallard W, O’Donnell CW, Tilburgs T, Gomes HAB, Camahort R, Sherwood RI, Gifford DK, Rinn JL, Cowan CA, Strominger JL . PNAS 113: 19, 5364-5369.
• Novel HDAd/EBV reprogramming vector and highly efficient Ad/CRISPR-Cas sickle cell disease gene correction（2016）Li C, Ding L, Sun C, Wu L, Zhou D, Pawlik KM, Khodadadi-Jamayran A, Westin E, Goldman F, Townes T.Nature Scientific Reports 6: 30422.
• CRISPR/Cas9-directed genome editing of cultured cells(2014)Yang L, Yang JL, Byrne S, Pan J, Church GM. Current Protocols in Molecular Biology 31.1.1-31.1.17.
• Targeted and genome-wide sequencing reveal single nucleotide variations impacting specificity of Cas9 in human stem cells(2104)Yang L, Grishin D, Wang G, Aach J, Zhang C, Chari R, Homsy J, Cai X, Zhao Y, Fan J, Seidman C, Seidman J, Pu W, Church G. Nature Communications 5:5507

微流体

• Inexpensive, rapid prototyping of microfluidic devices using overhead transparencies and a laser print, cut and laminate fabrication method(2015) Brandon Thompson, Yiwen Ouyang, Gabriela Duarte, Emanuel Carrilho, Shannon Krauss and James P. Landers. Nature Protocols 10: 875-886
• Frequency-specific flow control in microfluidic circuits with passive elastomeric features
  (2009) Daniel Leslie, Christopher Easley, Erkin Seker, James Karlinsey, Marcel Utz, Matthew Begley and James P. Landers. Nature Physics 5: 231-235
• A fully integrated microfluidic genetic analysis system with sample-in-answer-out capability
  (2006) Christopher J. Easley, James M. Karlinsey, Joan M. Bienvenue, Lindsay A. Legendre, Michael G. Roper, Sanford H. Feldman, Molly A. Hughes, Erik L. Hewlett, Tod J. Merkel, Jerome P. Ferrance, and James P. Landers. PNAS 103 (51): 19272-19277

细菌 / 真菌

•  Rapid extraction of DNA suitable for NGS workflows from bacterial cultures using PDQeX (2019)Stanton JL, Muralidhar A, Rand CJ, Saul DJ. BioTechniques 66:5, 208-213.
• Comparison of culturable antibiotic-resistant bacteria in polluted and non-polluted air in Beijing, China (2019) Mao Y, Ding P, Wang Y, Ding C, Wu L, Zheng P, Zhang X, Li X, Wang L, Sun Z.  Environment International 131: 104936.
•  Multiplex transcriptional characterizations across diverse and hybrid bacterial cell-free expression systems(2018)Yim SS, Johns NI, Park J, Gomes ALC, McBee RM, Richardson M, Ronda C, Chen SP, Garenne D, Noireaux V, Wang HH. bioRxiv
• Recovering greater fungal diversity from pristine and diesel fuel contaminated sub-Antarctic soil through cultivation using both a high and a low nutrient media approach (2015) Ferrari BC, Van Dorst J, Zhang C . Frontiers in Microbiology 2:217.
• Comparison of Three Methods for Routine Detection of Staphylococcus aureus Isolated from Bovine Mastitis(2013) Nikolina Rusenova, Wondwossen Gebreyes, Mariana Koleva, Jurii Mitev, Toncho Penev, Nasko Vasilev and Tchonka Miteva Kafkas Univ Vet Fak Derg 19: 709-712
• Diverse Honeydew-Consuming Fungal Communities Associated with Scale Insects.(2013) M.K. Dhami, B.S. Weir, M.W. Taylor, J.R. Beggs. PLOS ONE 0070316
• Diversity of Cryptosporidium PKS gene and using metabolomics to identify a polyketide product (2012) Ji M. BABS, University of New South Wales, 1-129.
•  A rapid method for the detection and quantification of the vector-borne bacterium ‘Candidatus Liberibacter solanacearum’ in the tomato potato psyllid, Bactericera cockerelli(2012) Beard SS, Scott IAW. Entomologia Experimentalis et Applicata 147(2): e12056.
• Pinning down a polymorphic parasite: New genetic and morphological descriptions of Eimeria macropodis from the Tammar wallaby (Macropus eugenii)(2012) Nichola J. Hill, Carolin Richter, Michelle L. Power Parasitology International 61: 461-465
• Recovering greater fungal diversity from pristine and diesel fuel contaminated sub-Antarctic soil through using both a high and a low nutrient media approach.(2011) Belinda C. Ferrari, Chengdong Zhang and Josie van Dorst Frontiers in Microbiology 2: 1-13
•  Molecular Epidemiology, Spatiotemporal Analysis, and Ecology of Sporadic Human Cryptosporidiosis in Australia (2011)Beggs PJ, Dimeski B, Ferrari BC, Power ML, Waldron LS. Applied and Environmental Microbiology 77(21): 7757-7765.
• Cultivating previously uncultured soil bacteria using a soil substrate membrane system(2008) Ferrari BC, Winsley T, Gillings M, Binnerup S. Nature Protocol 3: 1261-1269

血液, 带唾液和组织的血液

• The Role of Serine-Type Serine Repeat Antigen in Plasmodium yoelii Blood Stage Development(2013) Ximei Huang, Kingsley Liew, Onguma Natalang, Anthony Siau, Neng Zhang and Peter Rainer Preiser PLOS ONE April 2013 8: e60723
• An enzyme-based DNA preparation method for application to forensic biological samples and degraded stains(2012) J A. Lounsbury, N Coult, D C. Miranian, S M. Cronk, D M. Haverstick, P Kinnon, D J. Saul, J P. Landers Forensic Science International: Genetics 6:607-615
• Phylogeography of striped skunks (Mephitis mephitis) in North America: Pleistocene dispersal and contemporary population structure (2012) Heather D. Barton and Samantha M. Wisely Journal of Mammalogy 93: 38-51

昆虫 / 线虫

• A rapid method for the detection and quantification of the vector-borne bacterium ‘Candidatus Liberibacter solanacearum’ in the tomato potato psyllid, Bactericera cockerelli
  (2013) Sam S. Beard and Ian A.W. Scott Entomologia Experimentalis et Applicata 147: 196–200
• Population genetic structure of Simulium degrangei (Diptera: Simuliidae) from Western Carpathians(2012) Ladislav Jedlička1, Matúš Kúdela, Tomáš Szemes & Peter Celec Biologia 64: 777-787
• Evolution of Outcrossing in Experimental Populations of Caenorhabditis elegans(2012) Henrique Teotonio, Sara Carvalho, Diogo Manoel, Miguel Roque, Ivo M. Chelo PLoS ONE 7: e35811
• The Opportunity for Balancing Selection in Experimental Populations of Caenorhabditis elegans(2012) Ivo M. Chelo and Henrique Teotónio Evolution 67: 142-156
• Molecular phylogenetics of a South Pacific sap beetle species complex (Carpophilus spp., Coleoptera: Nitidulidae)(2012) Brown SD, Armstrong KF, Cruickshank RH. Mol Phylogenet Evol. 64: 428-440
• The population structure of Glossina fuscipes fuscipes in the Lake Victoria basin in Uganda: implications for vector control(2012) Hyseni C, Kato AB, Okedi LM, Masembe C, Ouma JO, Aksoy S, Caccone A. Parasites and Vectors 5: 222
• PCR and isothermal-based molecular identification of the stored-product psocid pest Lepinotus reticulatus(Psocoptera: Trogiidae) (2012) M Arif, F M. Ochoa-Corona, G P. Opit, Z-H Li, Z Kucerová, V Stejskal, Q-Q Yang Journal of Stored Products Research 49: 184-188
• Retracing the routes of introduction of invasive species: the case of the Sirex noctilio woodwasp(2012) E. Boissin, B. Hurley, M. J. Wingfield, R. Vasaitis, J. Stenlid, C. Davis, P. De Groot, R. Ahumada, A. Carnegie, A. Goldarazena, P. Klasmer, B. Wermelinger and B. Slippers. Molecular Ecology 21: 5728-5744

RNA

• HOXC10 is overexpressed in breast cancer and transcriptionally regulated by estrogen via involvement of histone methylases MLL3 and MLL4(2012) Khairul I Ansari, Imran Hussain, Sahba Kasiri and Subhrangsu S Mandal Journal of Molecular Endocrinology 48: 61-75
• Revealing the Mechanism of In Vitro Wound Healing Properties of Citrus tamurana Extract(2013) Madhyastha Harishkumar, Yamaguchi Masatoshi, Sameshima Hiroshi, Ikenoue Tsuyomu, and Maruyama Masugi BioMed Research International 2013: 963457
• SAM68 Regulates Neuronal Activity-Dependent Alternative Splicing of Neurexin-1(2011) Iijima T, Wu K, Witte H, Hanno-Iijima Y, Glatter T, Richard S, Scheiffele P. Cell 147: 1601-1614
• Monoallelic gene targeting in hypoblast stem cells reveals X chromosome inactivation(2012) Dongjun Han, Bert Binas Biochemical and Biophysical Research Communications 427: 563–567
• Mixed lineage leukaemia-4 regulates cell-cycle progression and cell viability and its depletion suppresses growth of xenografted tumour in vivo(2012) KI Ansari, S Kasiri, BP Mishra and SS Mandal British Journal of Cancer 2012: 1-10
• Histone methylase MLL1 has critical roles in tumor growth and angiogenesis and its knockdown suppresses tumor growth in vivo(2012) KI Ansari, S Kasiri and SS Mandal Oncogene 2012: 1-12
• Limbic Activation to Novel versus Familiar Food cues Predicts Food Preference and Alcohol Intake(2013) M Michaelides, M L. Miller, M Subrize, R Kim, L Robison, Y L. Hurd, G-J Wang, N D. Volkow & P K. Thanos. Brain research 1512: 37-44
• Ligand-binding dynamics rewire cellular signaling via estrogen receptor-α.(2013) Srinivasan S, Nwachukwu JC, Parent AA, Cavett V, Nowak J, Hughes TS, Kojetin DJ, Katzenellenbogen JA, Nettles KW Nat Chem Biol. 9: 326-332
• TFEB regulates lysosomal proteostasis.(2013) Song W, Wang F, Savini M, Ake A, di Ronza A, Sardiello M, Segatori L. Hum Mol Genet. 15: 1994-2009
• The Lin28b–let-7–Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells.(2013) MR. Copley, S. Babovic, C. Benz, DJHF. Knapp, PA. Beer, DG. Kent, S. Wohrer, DQ. Treloar, C. Day, K. Rowe, H. Mader, F. Kuchenbauer, R. Humphries & CJ. Eaves. Nat Cell Biol.2013/06/30/online: 1476-4679
• Diverse Honeydew-Consuming Fungal Communities Associated with Scale Insects(2013) M.K. Dhami, B.S. Weir, M.W. Taylor, J.R. Beggs PLOS ONEl. 0070316

唾液

• Chimerism detected in fraternal twins using ABI AmpFlSTR1 Identifiler(2009) Eileen Wu, Amel Al-Murrani, Elaine Doherty, Salim Aftimos, Alice George, Donald R. Love. Forensic Science International: Genetics Supplement Series 2: 226-227
• Detecting the Immune System Response of a 500 Year- Old Inca Mummy(2012) Angelique Corthals, Antonius Koller, Dwight W. Martin, Robert Rieger, Emily I. Chen, Mario Bernaski, Gabriella Recagno, Liliana M. Da ́valos PLoS ONE 7: e41244
• On-line cell lysis of bacteria and its spores using a microfluidic biochip(2012) Marianna Cíchová1,*, Miloslava Prokšová1, Lívia Tóthová1, Hunor Sántha2, Viktor Mayer2 Cent. Eur. J. Biol. 7: 230-240

组织 / 隐孢子虫

• Molecular epidemiology, spatiotemporal analysis, and ecology of sporadic human cryptosporidiosis in Australia (2011) Waldron LS, Dimeski B, Beggs PJ, Ferrari BC, Power ML. Appl Environ Microbiol 77: 7757-7765
• Diversity of Cryptosporidium PKS gene and using metabolomics to identify a polyketide product(2012) Mukan Ji University of New South Wales (Thesis)
• The potential of a New Zealand strain of Phasmarhabditis hermaphrodita for biological control of slugs(2012) M.J. Wilson, G. Burch, M. Tourna, L.T. Aalders and G.M. Barker New Zealand Plant Protection 65: 161-165
• Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers(2012) Adrian W. Briggs1, Xavier Rios, Raj Chari, Luhan Yang, Feng Zhang, Prashant Mali and George M. Church Nucleic Acids Res. 40: e117
• Stable Gene Targeting in Human Cells Using Single-Strand Oligonucleotides with Modified Bases(2012) Xavier Rios, Adrian W. Briggs, Danos Christodoulou, Josh M. Gorham, Jonathan G. Seidman, George M. Church PLoS ONE 7: e36697
• Determining the Diet of Larvae of Western Rock Lobster (Panulirus cygnus) Using High-Throughput DNA Sequencing Techniques(2012) R O’Rorke1, S Lavery, S Chow, H Takeyama, P Tsai, L E. Beckley, P A. Thompson, A M. Waite, A G. Jeffs PLoS ONE 7: e42757
• Recombinant Adeno-Associated Virus Serotype 6 Efficiently Transduces Primary Human Melanocytes(2013) Hilary M. Sheppard, James E. Ussher, Daniel Verdon, Jennifer Chen, John A. Taylor and P. Rod Dunbar PLOS ONE April 2013 8: e62753
• Germinal Center B-Cells Resist Transformation by Kras Independently of Tumor Suppressor Arf(2013) CD. Mullins, MY. Su, V. Hucthagowder, L. Chu, L. Lu, S. Kulkarni, D. Novack, R. Vij, M. H. Tomasson PLOS ONE June 2013 8: e67941